PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g20210.1.p

Common Name

BRADI_1g20210, LOC100825486

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GeBP

Protein Properties

Length: 414aa MW: 44544.1 Da PI: 6.4181

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g20210.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112	4e-35	112	210	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +sg +sf+++h+q ife+ Bradi1g20210.1.p 112 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRLRSGGTFSFRSPHEQAIFEI 204 79**********************99877778******************************************************* PP DUF573 92 skkiWg 97 ++ iW+ Bradi1g20210.1.p 205 ARTIWH 210 ***7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-31	113	210	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MQIQAPSIPI PRIPASRNPN PSQIPSPAPM LPAGDGPSAA VAAISFPDAD GDGYSEDGDF 60 TDAQFLEPPD PGLLDPTSSS ATALLPAAGS AGGSGGGGGG LASSGGGERR PLFQRLWTEE 120 DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRRRLQL DFSKSQLVEK LRRLKRKYRN 180 CVSRLRSGGT FSFRSPHEQA IFEIARTIWH HTTNKHGRDP SADSDDEEAA VAAAAAVAAT 240 AAPANNTSPN GEVKSPSGRQ RRRRRSSEYA TPTTPAATIL VQPPQPVQVP VSVPVKMDGS 300 LPALQQTPMP VTVTMEGSEP HRFPVTSPQS GVFDAEKNCL MPLFKEMIHA VINIGSNPFG 360 AKLPEPPLRL PMEGERWRNQ RILELEVYLK RIELLQEQVK ATLEELKSSA PGT*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MQIQAPSIPI PRIPASRNPN PSQIPSPAPM LPAGDGPSAA VAAISFPDAD GDGYSEDGDF  60
TDAQFLEPPD PGLLDPTSSS ATALLPAAGS AGGSGGGGGG LASSGGGERR PLFQRLWTEE  120
DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRRRLQL DFSKSQLVEK LRRLKRKYRN  180
CVSRLRSGGT FSFRSPHEQA IFEIARTIWH HTTNKHGRDP SADSDDEEAA VAAAAAVAAT  240
AAPANNTSPN GEVKSPSGRQ RRRRRSSEYA TPTTPAATIL VQPPQPVQVP VSVPVKMDGS  300
LPALQQTPMP VTVTMEGSEP HRFPVTSPQS GVFDAEKNCL MPLFKEMIHA VINIGSNPFG  360
AKLPEPPLRL PMEGERWRNQ RILELEVYLK RIELLQEQVK ATLEELKSSA PGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g20210.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755634.1	0.0	probable transcription factor At5g28040
TrEMBL	A0A0Q3ND73	0.0	A0A0Q3ND73_BRADI; Uncharacterized protein
STRING	BRADI1G20210.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123
Representative plant	OGRP3184	10	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-36	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi1g20210.1.p
Entrez Gene	100825486