PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g20586.3.p
Common NameBRADI_1g20586, LOC100835080
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 560aa    MW: 60970.8 Da    PI: 4.567
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g20586.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-082351146
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
  Bradi1g20586.3.p  2 LLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 35
                      6899********.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.694141IPR017930Myb domain
CDDcd001674.48E-5236No hitNo description
Gene3DG3DSA:1.10.10.609.0E-10240IPR009057Homeodomain-like
SuperFamilySSF466894.49E-8244IPR009057Homeodomain-like
PfamPF002491.6E-6235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MLLCEAQKLL GNKWTEIAKV VSGRTDNAVK NRFSTLCKRR SKDDELVEEN GSLCSNENAK  60
RVLTQTGDLT SSIPGSSLSI KQMRSRKPDF KENMAPNMRS FGQEKSIQQH SRQPLANISP  120
NNQHNVNIVG TQNDFAKDST MQLHGNGQTC VKNEGNFLKS NDPKFATLLQ QADLLSSLAT  180
KLNTENTSQS MDEAWQQLQH HLVKKEDNEM LESSISGTAS LLEELDDLIV DPYENEEEDE  240
RKEQNEQTDV SSKHSNGPLE TSMQVTSQMA LDMEIDICPI DKSTPDNSLC GNFLSSTPGV  300
EITASVNLGE AAEDSGLYCM EYSSPAHAVL QAKADAEIPA AKILSEAAEG SWSQFMEYTS  360
PAQTVVHAKA DAEIPVSISL SEAAEGSWHQ RMEYMSPAHT LLRAKADAEI PASVNSSEAA  420
KDCSLQCTEY TSPAHTDLRA ADVEILDTSS EIAQDCSLKC IKFTSPAHTA IEGKAEAKMP  480
ALENCSEVPK DSSTQPGMEF TSPAHTVPTF QRYTDDVPTP KITASERNFL LSVLGLTSPG  540
SKPDTSQQPS CKRALLNSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g20586.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751826.10.0transcription factor MYB124 isoform X2
TrEMBLA0A2K2DK970.0A0A2K2DK97_BRADI; Uncharacterized protein
STRINGBRADI1G20586.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.24e-34myb domain protein 88