PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g21980.2.p
Common NameBRADI_1g21980, LOC100836119
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 310aa    MW: 35159.5 Da    PI: 8.4752
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g21980.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-311059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+nrqvtfskRrng+lKKA+E+SvLCdaeva+i+fs++gklyeyss
  Bradi1g21980.2.p 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59
                      8***********************************************96 PP
2K-box91.91.1e-30891731498
             K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       ++++  e+ +Lk +++ Lq++qR+llGe+Le+L+ +eLqqLeqqL++slk+iRs+Kn+ll+++i+elqkkek+l+++n  L+k l
  Bradi1g21980.2.p  89 QANWGDEYGRLKIKLDALQKSQRQLLGEQLEPLTTRELQQLEQQLDSSLKHIRSRKNQLLFDSISELQKKEKSLKDQNGVLQKHL 173
                       6799*****************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-32284IPR002100Transcription factor, MADS-box
CDDcd002652.55E-41275No hitNo description
PRINTSPR004046.4E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2888172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.98289179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSQ  60
DSSMDVILER YQRYSFEERA VLDPNIGDQA NWGDEYGRLK IKLDALQKSQ RQLLGEQLEP  120
LTTRELQQLE QQLDSSLKHI RSRKNQLLFD SISELQKKEK SLKDQNGVLQ KHLVETEKEK  180
NNALSNIQHR EQLNEKNTAL PNTHDREQQN GATTSSPSPT PLTVLDSMPN LNIGYYASHI  240
HCIDVCSRHI NLEKQEENQN LSRLQHKQTA ASYRHGCSAP SVTDEGFQCP HVTLHPKGIS  300
VPSGVHHGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-22175173MEF2 CHIMERA
6byy_B5e-22175173MEF2 CHIMERA
6byy_C5e-22175173MEF2 CHIMERA
6byy_D5e-22175173MEF2 CHIMERA
6bz1_A5e-22175173MEF2 CHIMERA
6bz1_B5e-22175173MEF2 CHIMERA
6bz1_C5e-22175173MEF2 CHIMERA
6bz1_D5e-22175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g21980.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693000.0KF469300.1 Brachypodium distachyon MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289795.10.0MADS-box transcription factor 18
SwissprotA2YNI21e-114MAD18_ORYSI; MADS-box transcription factor 18
SwissprotQ0D4T41e-114MAD18_ORYSJ; MADS-box transcription factor 18
TrEMBLI1GSJ00.0I1GSJ0_BRADI; MADS-box transcription factor 3
STRINGBRADI1G21980.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Chen C, et al.
    Adapting rice anther culture to gene transformation and RNA interference.
    Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
    [PMID:17172048]
  3. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  4. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  5. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  9. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  10. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]