PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g22920.1.p

Common Name

BRADI_1g22920, LOC100829268

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 238aa MW: 24322.7 Da PI: 7.9889

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g22920.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98	9.3e-31	12	113	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ +l++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg+++++++ql+ Bradi1g22920.1.p 12 SCNGCRVLRKGCNEACVLRPCLhwieaAESQGHATVFVAKFFGRAGLLSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLWSGSWQLC 104 6*******************9999777889********************************************************* PP DUF260 89 qlkaelall 97 +++++++l+ Bradi1g22920.1.p 105 EAAVQTVLR 113 9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.796	11	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-26	12	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MRGIEWAAAG MSCNGCRVLR KGCNEACVLR PCLHWIEAAE SQGHATVFVA KFFGRAGLLS 60 FLTAVPEPQR PAVFQSLLYE AAGRTINPVS GAVGLLWSGS WQLCEAAVQT VLRGGAIGPL 120 PDLAGGVPEG GVGGSDLFVS SARRATAVGC STFSTAKRVN TTTTRRPGMP LQAAPAHQQL 180 QDPSCDLGLW LSGPGSPSVA AAGKRAGTPS MSSDDDSVTT SGGAGGGREP ELLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g22920.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562786.1	1e-170	LOB domain-containing protein 37
Swissprot	Q9SZE8	7e-67	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	I1GSU5	1e-169	I1GSU5_BRADI; Uncharacterized protein
STRING	BRADI1G22920.1	1e-170	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	6e-65	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Bradi1g22920.1.p
Entrez Gene	100829268