PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g22940.1.p
Common NameBRADI_1g22940, LOC100837436
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 245aa    MW: 24019.9 Da    PI: 8.4807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g22940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014102124123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ Cgk++ +   L  H  +H
  Bradi1g22940.1.p 102 YECSVCGKVYASYQALGGHKTSH 124
                       99********9999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.78E-8100176No hitNo description
SMARTSM003550.04102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014102129IPR007087Zinc finger, C2H2
PfamPF139126.0E-13102126IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
PfamPF139124.8E-12153178IPR007087Zinc finger, C2H2
SMARTSM003550.5154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPSAAVSVL SIVEEAASRG KSPVPPPPSP PRMDSWGARG GRGSRRRGPG SGSGSLGGGG  60
AESEEEYLAL CLLMLARGVR GDGDGDVKGA GAAAGAAATK GYECSVCGKV YASYQALGGH  120
KTSHRKPPAP APAASEEASG GAAVAAAAAE AKVHRCSLCL RTFPSGQALG GHKRLHYEGG  180
SAAGDGTKEG AGVKAKAAAA LLRDFDLNLP AAAPSTTAGG DDAEAESAPP EAKRARLQVL  240
LAAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g22940.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560019.11e-168zinc finger protein 36
TrEMBLI1GSU71e-166I1GSU7_BRADI; Uncharacterized protein
STRINGBRADI1G22940.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-25C2H2 family protein