PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g22960.1.p
Common NameBRADI_1g22960
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 319aa    MW: 34020.6 Da    PI: 5.0575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g22960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-112422821055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k +q
  Bradi1g22960.1.p 242 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 282
                       9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-14233297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12237292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.97E-12241286No hitNo description
PfamPF000102.5E-8242282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MESSYSSTSA VPMEAGDAIA QFLGLGAEAH GGHGSHGCFA YEQQDESMAA MAAMLFMPGL  60
DTDSNSSSSC LNYDVSPHCW PQPQPGHAHS SSVTSFLDPA AHGFEGFEFP VMEMGDDPFQ  120
HAHFEPRCTT IPFLGEEFLG NHSSGATGGD EAANDHAPVN NKRKSSSSAM PASKKAKKAG  180
KKGLTGNEND EGGDAYIVDP QSSSSCTSED GDVDGNAKSC SKKTGTRASR GAATDPQSLY  240
ARKRRERINE RLKILQNLVP NGTKVDISTM LEEAVEYVKF MQLQIKLLSS DDTWMYAPLA  300
YNGMNVGSFD LNIAALRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g22960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229624.30.0transcription factor HEC2
TrEMBLA0A0Q3GY710.0A0A0Q3GY71_BRADI; Uncharacterized protein
STRINGBRADI1G22960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-52bHLH family protein