PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23090.1.p
Common NameBRADI_1g23090, LOC100831711
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HRT-like
Protein Properties Length: 548aa    MW: 59666.8 Da    PI: 10.0487
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.62.2e-18305335131
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                       +CGv ledGs C ++Pv+gRKRCe HKG+R+
  Bradi1g23090.1.p 305 VCGVVLEDGSSCLENPVEGRKRCELHKGRRV 335
                       7*****************************7 PP
2HRT-like512.4e-16510539130
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                       iCG++ +dGs+Ck+qP  gRKRC+ HKG+R
  Bradi1g23090.1.p 510 ICGARASDGSPCKNQPSAGRKRCALHKGQR 539
                       8****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004650.002772178IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MPAAPAPAAR LKREDCPRTK HDSLFSPWKV LVGPSDWEDH AAGKEGVQRY HTLNLPDNFP  60
GLYELGVARP SSEGVRARRN LLGGVVVMYL GQADNVRARL QQYGRTGSHL DTGNPSVSVC  120
KAEMNMLEAG PGLFREVFSR GYSVVFRCAL MGNKKEAEKT EGQLLRVFDY AWNKLQNGAC  180
RREEILLKLE VGSHRASLLC RVRQLKQKMF GEKAGIKISS SASVDMSSDT MKHMLPRICT  240
FVGFRPRIVN SGDDSGNMIA IHPKRTSESN TTGNKQAHRR SEGYKVKKIN VIKRRTAPVQ  300
ESNSVCGVVL EDGSSCLENP VEGRKRCELH KGRRVTVIGS PKAESSSSYR CQVGIPTVES  360
VPRLSENRSK SGQAWHTSVD KSKNMFLNAK ESSRRMDISE AKEVKTGEAL VEDVTSGTSD  420
PESQFKEDQP SGRMWFELLK AQKLASRSRG QGSRARVADD MAAECGIVTD NGCCRLVPVA  480
GSNRCKEHEG IQATGAPSVP SPGSSGWPSI CGARASDGSP CKNQPSAGRK RCALHKGQRA  540
ASTPLIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562794.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLI1GSW20.0I1GSW2_BRADI; Uncharacterized protein
STRINGBRADI1G23090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.18e-62effector of transcription2