PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23340.2.p
Common NameBRADI_1g23340
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 530aa    MW: 57577.8 Da    PI: 6.5851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23340.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32151208260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +er+a d++++e++Y+g+Hnh+k
  Bradi1g23340.2.p 151 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERAA-DGQITEVVYKGRHNHPK 208
                       8****************************************.***************85 PP
2WRKY107.66.3e-34324382159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++dpk v++tYeg+Hnhe
  Bradi1g23340.2.p 324 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASHDPKSVITTYEGKHNHE 382
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-28143209IPR003657WRKY domain
PROSITE profilePS5081124.122145209IPR003657WRKY domain
SuperFamilySSF1182909.81E-25148209IPR003657WRKY domain
SMARTSM007744.4E-35150208IPR003657WRKY domain
PfamPF031069.9E-25151207IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-38309384IPR003657WRKY domain
SuperFamilySSF1182909.81E-30316384IPR003657WRKY domain
PROSITE profilePS5081138.871319384IPR003657WRKY domain
SMARTSM007741.4E-39324383IPR003657WRKY domain
PfamPF031061.7E-26325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MKVEPSPTTG SLGMAAIMHK SAHPDILPSP RDKSVLSAHE DGGSRDFEFK PHLNSSSQSM  60
APAMSDLKNH EHSMQNQSTN PSSSSNMVIE YRPPCSREST LAVNVSSAQD QLGLTDSMPV  120
DVGTSELHQM NNSENAMQEP QSEHATEKSA EDGYNWRKYG QKHVKGSENP RSYYKCTHPN  180
CEVKKLLERA ADGQITEVVY KGRHNHPKPQ PNRRLAGGAV PSNQGEDRND GLAAIDDKSS  240
NVLSILGNPV HSTGMAEPVP GSASDDDIDA GAGRPYPGDD ATEDDDLESK RRKMESAGID  300
AALMGKPNRE PRVVVQTVSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSTGCPVRKH  360
VERASHDPKS VITTYEGKHN HEVPAARNAS HEMPAPPMKN AVHPINSNMP SSIGGMMRAC  420
EARNFTNQYS QASETETISL DLGVGISPNH REATNQIQSS VPDQMQYQMQ PMASVYGNMR  480
LPAMAMPTVQ GHAAGSIYGS REEKGNEGFT FKATPMDHSA NLCYSGAGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37151385878Probable WRKY transcription factor 4
2lex_A3e-37151385878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23340.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2013840.0KM201384.1 Stipa purpurea WRKY17 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315261.10.0WRKY transcription factor SUSIBA2 isoform X2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLI1GSZ00.0I1GSZ0_BRADI; Uncharacterized protein
STRINGBRADI1G23340.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-104WRKY family protein