PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23350.1.p
Common NameBRADI_1g23350, LOC100837965
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 550aa    MW: 61151.1 Da    PI: 6.3006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.21.5e-1341795481373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL++cA+av++++  +++ ++ +l++++s +g+p+qRl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++P++kf
  Bradi1g23350.1.p 179 LKELLVACARAVEEKNGYAIDMMIPELRKMVSVSGEPLQRLGAYMVEGLVARLASSGHSIYKALKCKEPK---SSDLLSYMHFLYEACPYFKF 268
                       5799*****************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ aN aI eav+ge+r+HiiDf isqG+QW++LlqaLa+Rp+gpp+++iTg++++ s   +   l  +g+rL+++A  ++vpfef++ va 
  Bradi1g23350.1.p 269 GYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVKITGIDDSVSAyaRDGGLDIVGRRLSHIAGLCKVPFEFHA-VAI 360
                       ********************************************************888898999************************.688 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       + +++e ++L v pgEalaVn+ l+lh++ de+vs++++rd++L+lvkslsP+v+++veqe+++n+++F++rf+e+l+yy+a+f+s++ +lpr
  Bradi1g23350.1.p 361 SGDEVEERHLGVIPGEALAVNFTLELHHISDETVSTANHRDRILRLVKSLSPNVLTLVEQESNTNTAPFVQRFAETLDYYTAIFESIDLTLPR 453
                       9******************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls+ +++++++ll+ ++++ y++ e++g l+lgWk+rpLv+ 
  Bradi1g23350.1.p 454 DDKERINMEQHCLAREIVNLVACEGSERVERHEVFGKWKARLMMAGFRPSPLSSLVNDTIRTLLQSYSVN-YQLAERDGVLYLGWKNRPLVVS 545
                       ********************************************************************88.********************** PP

              GRAS 371 SaW 373
                       SaW
  Bradi1g23350.1.p 546 SAW 548
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.416153530IPR005202Transcription factor GRAS
PfamPF035145.0E-132179548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MANTPTSRMM HPFGSVPRQN LKQFQYSDNA QHTCHPYQSS PDTHVVPQHD YSLKSHSPDA  60
GFENQVTHMK YTLDSSAEVG CMRHDSPSSH SFTPRSDSSS PLSQEDSHSD STNGSPVSAS  120
CVTVTEDPNH LRQKLKDLEA VMLGPDSEVV NSLESSIANQ LSLEPEKWVQ MMRFPRDNLK  180
ELLVACARAV EEKNGYAIDM MIPELRKMVS VSGEPLQRLG AYMVEGLVAR LASSGHSIYK  240
ALKCKEPKSS DLLSYMHFLY EACPYFKFGY MSANGAIAEA VKGEDRIHII DFHISQGAQW  300
ISLLQALAAR PGGPPTVKIT GIDDSVSAYA RDGGLDIVGR RLSHIAGLCK VPFEFHAVAI  360
SGDEVEERHL GVIPGEALAV NFTLELHHIS DETVSTANHR DRILRLVKSL SPNVLTLVEQ  420
ESNTNTAPFV QRFAETLDYY TAIFESIDLT LPRDDKERIN MEQHCLAREI VNLVACEGSE  480
RVERHEVFGK WKARLMMAGF RPSPLSSLVN DTIRTLLQSY SVNYQLAERD GVLYLGWKNR  540
PLVVSSAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-661835498375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23350.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562815.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLI1GSZ10.0I1GSZ1_BRADI; Uncharacterized protein
STRINGBRADI1G23350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]