PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24051.1.p
Common NameBRADI_1g24051, LOC100825052
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 168aa    MW: 17970.4 Da    PI: 6.5009
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY143.71.9e-44121636167
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                        +e++ yvqC+fC+t l+vsvP + l+k+v+v+CG C+ +lsv++a      ++a         e  l+el+v+    +  +e++  ++ + +
  Bradi1g24051.1.p  12 LPERLGYVQCKFCTTTLLVSVPCSNLLKMVAVQCGRCAGVLSVSVASPPsSPTPAPPS-----VELPLQELGVDPPPREWSDESTGDEEGDGE 99 
                       589***************************************9998754155666665.....333456677766655554444444444443 PP

             YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                              e  e+  +  v++PP ++qr Psayn+fikeei+rika  P+i+h+eafs+aaknWah+P+i 
  Bradi1g24051.1.p 100 G------EAAESNAAATVNKPPVRKQRTPSAYNCFIKEEIKRIKALEPNITHKEAFSTAAKNWAHLPRIQ 163
                       3......44455556679**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.2E-4913164IPR006780YABBY protein
SuperFamilySSF470951.15E-6111160IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-4118160IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSSSLVHLEL GLPERLGYVQ CKFCTTTLLV SVPCSNLLKM VAVQCGRCAG VLSVSVASPP  60
SSPTPAPPSV ELPLQELGVD PPPREWSDES TGDEEGDGEG EAAESNAAAT VNKPPVRKQR  120
TPSAYNCFIK EEIKRIKALE PNITHKEAFS TAAKNWAHLP RIQHRGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g24051.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560056.11e-120protein YABBY 7
SwissprotA2PZN88e-61YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A0Q3RRF51e-119A0A0Q3RRF5_BRADI; Uncharacterized protein
STRINGBRADI1G24050.17e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Representative plantOGRP1397344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.16e-32YABBY family protein