PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g24051.2.p

Common Name

BRADI_1g24051, LOC100825052

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

YABBY

Protein Properties

Length: 166aa MW: 17790.2 Da PI: 6.5009

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g24051.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	131.7	9.2e-41	12	161	6	167
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +e++ yvqC+fC+t l+vsvP + l+k+v+v+CG C+ +lsv++a ++a + e l+el+v+ + +e++ ++ + + Bradi1g24051.2.p 12 LPERLGYVQCKFCTTTLLVSVPCSNLLKMVAVQCGRCAGVLSVSVASPPsSPTPAPPSV-----ELPLQELGVDPPPREWSDESTGDEEGDGE 99 589**************************************9987541566666653.....33456677776666655555555555555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 e ++n v + ++qr Psayn+fikeei+rika P+i+h+eafs+aaknWah+P+i Bradi1g24051.2.p 100 GEAAESNAAATVN------K--LRKQRTPSAYNCFIKEEIKRIKALEPNITHKEAFSTAAKNWAHLPRIQ 161 5443444444444......3..468*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-45	13	162	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-6	116	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.7E-4	117	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MSSSLVHLEL GLPERLGYVQ CKFCTTTLLV SVPCSNLLKM VAVQCGRCAG VLSVSVASPP 60 SSPTPAPPSV ELPLQELGVD PPPREWSDES TGDEEGDGEG EAAESNAAAT VNKLRKQRTP 120 SAYNCFIKEE IKRIKALEPN ITHKEAFSTA AKNWAHLPRI QHRGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g24051.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560056.1	9e-89	protein YABBY 7
Swissprot	A2PZN8	5e-61	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A2K2DKU1	1e-118	A0A2K2DKU1_BRADI; Uncharacterized protein
STRING	OB07G25220.1	3e-60	(Oryza brachyantha)
STRING	LPERR07G16630.1	3e-60	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-28	YABBY family protein

Link Out ? help Back to Top
Phytozome	Bradi1g24051.2.p
Entrez Gene	100825052