PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g24700.4.p

Common Name

BRADI_1g24700, LOC100839154

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 898aa MW: 101166 Da PI: 7.4113

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g24700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.3	2e-26	110	197	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a l+++++ +gk+++t+++ +HnH+la Bradi1g24700.4.p 110 EFYNAYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGT-KESKCPRPETRIGCPAGLTIRLTANGKYRLTEFVPNHNHQLA 197 6******************97766.************9988.9999**********************************97 PP
2	FAR1	80.3	3.5e-25	239	326	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF++r+++++ + ++ it+r fvCskeg+re++k + + +++r+etrtgC a++++++ +d k++vt++++ HnH+l Bradi1g24700.4.p 239 EFYSMYAGKIGFNIRRASMTVN-AENVITRRMFVCSKEGFREKKKGGAYRVKKPRPETRTGCPACMVIRLASDVKYHVTEFVTFHNHQL 326 6**************99998.5566****************9*************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-24	110	197	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.4E-21	239	326	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-22	442	536	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.93	710	757	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-9	710	756	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	732	759	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MSSNSSGSAK EKGLQIFTPL VKPPFAQSFR PVHALGSPTT DLRLSQQSWP GNVALHPCTP 60 WPGNPANPQQ NGELVADVVA ADVNPVIDNC DDKMLPKVDM LFDGENEAYE FYNAYAENVG 120 FFVRRSTLWT TSKNIITRRT FVCSREGFRE KKKGTKESKC PRPETRIGCP AGLTIRLTAN 180 GKYRLTEFVP NHNHQLATAS MIQMLKEKKI RRKARAVREN LVDDTVRTPE FENEDEAYEF 240 YSMYAGKIGF NIRRASMTVN AENVITRRMF VCSKEGFREK KKGGAYRVKK PRPETRTGCP 300 ACMVIRLASD VKYHVTEFVT FHNHQLGAAA ASDLVMASQS TGNGQENGVD LADISPDDSI 360 DEQNLMKDYV TSNCLGGRSQ KRYKCKVPHH GDVGATLEYL QKMQHDNPSF FYAVKSDGDG 420 NLTNFVWVDS KSIMDFVHFG DVVCLDSGYA VQGYGRPVAL FIGLNHHKQT VIFGAALLYD 480 ESFEAFRWLF DTFKMAMNGT HPKTLLTDRS SVISEAVAAS WPATAHRYCV WQIYQNALQQ 540 LSHAFHGSRT LEYDFKRCLF DCEDEAEFLA AWREMLEKYD LEDNQWLKDL FALKEKWALP 600 YGRRAFYADM KSVQQKENLS HELKKHLSLE CDLLSFFVQF ERLLCDRRIA ELQADVGASH 660 STKKPPSMRI LRQAANIYTH AAYKMFEREF ELYMDCMLYN CGEMGTIAEY RISVEDNPKD 720 HFVKFDSLNS MASCSCKGFE FVGVPCRHIL KVLDTKNIKD LPPQYILKRW RKDAKSGSSN 780 GGYAYPFDGD PQLALTKRHT LLCRLFSIAA ARAAISAESF AYMENQSGIL LDQVEQVLQN 840 SPLDIAAGIG ASCVRTQNPV ESMVTADLHS HTNFIDGSTD GSLTFPFTTG AGTLDYL*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MSSNSSGSAK EKGLQIFTPL VKPPFAQSFR PVHALGSPTT DLRLSQQSWP GNVALHPCTP  60
WPGNPANPQQ NGELVADVVA ADVNPVIDNC DDKMLPKVDM LFDGENEAYE FYNAYAENVG  120
FFVRRSTLWT TSKNIITRRT FVCSREGFRE KKKGTKESKC PRPETRIGCP AGLTIRLTAN  180
GKYRLTEFVP NHNHQLATAS MIQMLKEKKI RRKARAVREN LVDDTVRTPE FENEDEAYEF  240
YSMYAGKIGF NIRRASMTVN AENVITRRMF VCSKEGFREK KKGGAYRVKK PRPETRTGCP  300
ACMVIRLASD VKYHVTEFVT FHNHQLGAAA ASDLVMASQS TGNGQENGVD LADISPDDSI  360
DEQNLMKDYV TSNCLGGRSQ KRYKCKVPHH GDVGATLEYL QKMQHDNPSF FYAVKSDGDG  420
NLTNFVWVDS KSIMDFVHFG DVVCLDSGYA VQGYGRPVAL FIGLNHHKQT VIFGAALLYD  480
ESFEAFRWLF DTFKMAMNGT HPKTLLTDRS SVISEAVAAS WPATAHRYCV WQIYQNALQQ  540
LSHAFHGSRT LEYDFKRCLF DCEDEAEFLA AWREMLEKYD LEDNQWLKDL FALKEKWALP  600
YGRRAFYADM KSVQQKENLS HELKKHLSLE CDLLSFFVQF ERLLCDRRIA ELQADVGASH  660
STKKPPSMRI LRQAANIYTH AAYKMFEREF ELYMDCMLYN CGEMGTIAEY RISVEDNPKD  720
HFVKFDSLNS MASCSCKGFE FVGVPCRHIL KVLDTKNIKD LPPQYILKRW RKDAKSGSSN  780
GGYAYPFDGD PQLALTKRHT LLCRLFSIAA ARAAISAESF AYMENQSGIL LDQVEQVLQN  840
SPLDIAAGIG ASCVRTQNPV ESMVTADLHS HTNFIDGSTD GSLTFPFTTG AGTLDYL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g24700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753080.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312469.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312470.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312471.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312472.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024312473.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1GTG2	0.0	I1GTG2_BRADI; Uncharacterized protein
STRING	BRADI1G24700.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP13975	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g24700.4.p
Entrez Gene	100839154