PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24720.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 905aa    MW: 100111 Da    PI: 7.7664
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24720.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18413512198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Bradi1g24720.3.p 413 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDGSGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDIVTFSRID-PE 503
                       89**************************555566778***************9989999999***9.********************987.66 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++l +++++
  Bradi1g24720.3.p 504 GKLIMGFRK 512
                       666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-30408519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20410516IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-24411512No hitNo description
PfamPF023624.0E-16413512IPR003340B3 DNA binding domain
SMARTSM010195.3E-22413513IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209413514IPR003340B3 DNA binding domain
PROSITE profilePS5105014.265660710IPR011124Zinc finger, CW-type
PfamPF074962.1E-11665707IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MAPTGSTWSD RYVVAISEDI REFCVKLGGL WFDSRATHGW VPGACMHVCS LFSVCSGSFE  60
QGSFCETFHS EVAGWRNCEA CGKRLHCGCI VSIHAYALLD AGGVDCILCT RKSYAAAAMA  120
PNQMCPTPTM HMPQNVADKK DSFVKSWRPP GGPYPSQWRQ NSLWSVSGIQ SDLQQRLAYE  180
FDRPSGSEKL PPGRTFIHAQ EKKFDDMHDR PTTPAGMNQI IRDRHADGHG QQTSMDPAHS  240
YALYQREGPN PNSLHDHSHH GGESDSTSAR KGIISEGCSS NIVSSSFKLD SRHPLESLLK  300
ENISLLPVGV GCTITNCPPV NGRNDIVRII PHQPTSQTPS SAASSAQKQF YSHTVIDPEY  360
QSHFRNGKPR MDAKARSQLL PRYWPRITDK ELQHLSAEYP KRTNSKSVIT PLFEKMLSAS  420
DAGRIGRLVL PKKCAEAYFP PISQPEGLPL KVQDGSGKEW VFQFRFWPNN NSRMYVLEGV  480
TPCIQSMHLQ AGDIVTFSRI DPEGKLIMGF RKSTTQEQIL RQEQPTKPAN AAVTAPPEVN  540
VNVARPHEVN TENKNISPVD QAAVGKVENG GVAQKEGPGT ARSSPGSLKR KATSVGPKIK  600
RFRMDNEESM ELKITWEEAQ ELLRPPLKAP SVVIVDGHEF EEYEEPPILG RRTYFVTDQS  660
GENHQWAQCE DCSKWRKLPV GALLPSKWTC SDNKWDPERT SCESAQEATT EELAELFPIK  720
AGAAKKPKAR IEPDSIDVSD GLDTLANLAI LGEGESLPSQ PTTKHPRHRP GCSCIVCIQP  780
PSGKGPKHKQ TCTCNVCMTV RRRFKTLMLR REKRLSEKDT EEPRRKEVPQ TGSDPPLGST  840
SPTSSPQKAD ANPDDAEDMV VDHRMSSSPV KNQIDLNIQP EREDEQSPKS NAVGAARLPR  900
DNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-603855132124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g24720.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236982.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K2DKX70.0A0A2K2DKX7_BRADI; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-147HSI2-like 1