PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24720.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 899aa    MW: 99337 Da    PI: 7.591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24720.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18407506198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Bradi1g24720.4.p 407 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDGSGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDIVTFSRID-PE 497
                       89**************************555566778***************9989999999***9.********************987.66 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++l +++++
  Bradi1g24720.4.p 498 GKLIMGFRK 506
                       666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-30403513IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20404510IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-24405506No hitNo description
SMARTSM010195.3E-22407507IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209407508IPR003340B3 DNA binding domain
PfamPF023624.0E-16407506IPR003340B3 DNA binding domain
PROSITE profilePS5105014.265654704IPR011124Zinc finger, CW-type
PfamPF074962.1E-11659701IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MAPTGSTWSD RYVVAISEDI REFCVKLGGL WFDSRATHGW VPGACMHVCS LFSVCSGSFE  60
QGSFCETFHS EVAGWRNCEA CGKRLHCGCI VSIHAYALLD AGGVDCILCT RKSYAAAAMA  120
PNQMCPTPTM HMPQNVADKK DSFVKSWRPP GGPYPSQWRQ NSLWSVSGIQ SDLQQRLAYE  180
FDRPSGSEKL PPGRTFIHAQ EKKFDDMHDR PTTPAGMNQI IRDRHADGHG QQTSMDPAHS  240
YALYQREGPN PNSLHDHSHH GGESDSTSAR KGIISEGCSS NIVSSSFKLD SRHPLESLLK  300
ENISLLPVGV GCTITNCPPV NGRNDIVRII PHQPTSQTPS SAASSAQKQF YSHTVIDPEY  360
QSHFRNGKPR MDAKARSQLL PRYWPRITDK ELQHLSADSK SVITPLFEKM LSASDAGRIG  420
RLVLPKKCAE AYFPPISQPE GLPLKVQDGS GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS  480
MHLQAGDIVT FSRIDPEGKL IMGFRKSTTQ EQILRQEQPT KPANAAVTAP PEVNVNVARP  540
HEVNTENKNI SPVDQAAVGK VENGGVAQKE GPGTARSSPG SLKRKATSVG PKIKRFRMDN  600
EESMELKITW EEAQELLRPP LKAPSVVIVD GHEFEEYEEP PILGRRTYFV TDQSGENHQW  660
AQCEDCSKWR KLPVGALLPS KWTCSDNKWD PERTSCESAQ EATTEELAEL FPIKAGAAKK  720
PKARIEPDSI DVSDGLDTLA NLAILGEGES LPSQPTTKHP RHRPGCSCIV CIQPPSGKGP  780
KHKQTCTCNV CMTVRRRFKT LMLRREKRLS EKDTEEPRRK EVPQTGSDPP LGSTSPTSSP  840
QKADANPDDA EDMVVDHRMS SSPVKNQIDL NIQPEREDEQ SPKSNAVGAA RLPRDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-613855071123B3 domain-containing transcription repressor VAL1
5yzz_C1e-613855071123B3 domain-containing transcription repressor VAL1
5z00_C1e-613855071123B3 domain-containing transcription repressor VAL1
5z00_G1e-613855071123B3 domain-containing transcription repressor VAL1
5z00_K1e-613855071123B3 domain-containing transcription repressor VAL1
5z00_M1e-613855071123B3 domain-containing transcription repressor VAL1
6j9a_A1e-613855072124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g24720.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236989.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K2DKY40.0A0A2K2DKY4_BRADI; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-143HSI2-like 1