PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g25230.1.p

Common Name

BRADI_1g25230, LOC100826112

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 230aa MW: 25197.5 Da PI: 4.9172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g25230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	61	106	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +ErrRR r+N+ + Lr ++Pk +K+sK ++L A+++Ik+Lq Bradi1g25230.1.p 61 NLDAERRRRGRLNNNILALRAVVPKI-----TKMSKESTLSDAIDHIKKLQ 106 5579*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-15	56	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.621	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-10	60	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-12	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	63	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048656	Biological Process	anther wall tapetum formation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MPRRPRAPRG GGSGGGEEVK MEDFVESMLN FGGGGGGGGE DESEEGEQLP AGEETKYKSK 60 NLDAERRRRG RLNNNILALR AVVPKITKMS KESTLSDAID HIKKLQNEVL ELQSQLADSP 120 GEAWEKQGSA SCSESFVPTD NIHYQGQVEL IPLGSFKYNL KIFWTKKAGL FTKVLEALCS 180 YNVQVLSLNT ITFYGYAESF FSIEVKGEPD VVMVELRNLL SSIVEVPSM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g25230.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242516	1e-167	AK242516.1 Oryza sativa Japonica Group cDNA, clone: J080312F02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562948.1	1e-168	transcription factor UDT1
Swissprot	B9FXT3	1e-103	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	I1GTM5	1e-167	I1GTM5_BRADI; Uncharacterized protein
STRING	BRADI1G25230.1	1e-167	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36
Representative plant	OGRP13980	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi1g25230.1.p
Entrez Gene	100826112

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]