PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29820.1.p
Common NameBRADI_1g29820
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 196aa    MW: 21024.6 Da    PI: 8.5069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-0681102223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +Cp C ++F+++   + H+r+H
  Bradi1g29820.1.p  81 RCPVCERTFRTPKGVHGHMRVH 102
                       7*******************99 PP
2zf-C2H215.26.3e-05126148123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C +Cg+ F+++ +L  H  +H
  Bradi1g29820.1.p 126 YECAHCGTQFPTRQSLGGHRASH 148
                       99**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00580102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.70280107IPR007087Zinc finger, C2H2
PfamPF138944.4E-481102No hitNo description
Gene3DG3DSA:3.30.160.603.4E-481104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-781148No hitNo description
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139122.9E-8125150IPR007087Zinc finger, C2H2
SMARTSM003550.078126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907126150IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASSPFVMSG AGQVHPHLLA SSGGGGGDDP SNNWPYNLPS SHALDTTAVV LSNLTIKKKK  60
KKKKKKGAGA GEEGPLIIQI RCPVCERTFR TPKGVHGHMR VHTDRGWRGM DPAPPPPPHA  120
AAGYRYECAH CGTQFPTRQS LGGHRASHSG IPGCSELSRI VQLQQQQQRV VRPFDLNELP  180
ATEAEEENED PDGDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15665KKKKKKKKKK
25765KKKKKKKKK
35965KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g29820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1GV761e-143I1GV76_BRADI; Uncharacterized protein
STRINGBRADI1G29820.11e-144(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Representative plantOGRP1137324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-07C2H2 family protein