PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g29920.2.p

Common Name

BRADI_1g29920, LOC100843849

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 151aa MW: 16568.8 Da PI: 9.2699

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g29920.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	1e-15	81	134	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 e++r+ r+++NRe+A rsR+RK+a++eeLe++v L N +Lk ++ k+eva+l Bradi1g29920.2.p 81 EDRRTVRMMRNRESALRSRARKRAYVEELEKEVRRLVDDNLKLK---KQCKEEVAAL 134 799*************************************9999...8888888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-10	79	140	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-12	81	128	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.519	81	126	IPR004827	Basic-leucine zipper domain
CDD	cd14707	9.52E-18	83	129	No hit	No description
SuperFamily	SSF57959	4.25E-11	83	129	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.1E-13	83	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MASFGGQYVG TGAWMREPES PQLSLMSGCS SLFSISVLRD GDDLGGGVRS LPATPVSLAG 60 FVGAGDEVEM MDHLRQGSGD EDRRTVRMMR NRESALRSRA RKRAYVEELE KEVRRLVDDN 120 LKLKKQCKEE VAALVLPSKS SLRRTSSTQF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g29920.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249012	5e-46	AK249012.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf15j05, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563257.1	1e-103	ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2K2DM03	1e-104	A0A2K2DM03_BRADI; Uncharacterized protein
STRING	BRADI1G29920.1	1e-102	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	3e-10	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi1g29920.2.p
Entrez Gene	100843849