PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g30813.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 694aa    MW: 76650.1 Da    PI: 5.6306
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g30813.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.77e-20194250156
           G2-like   1 kprlrWtpeLHerFveaveqLGG.sekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       kprlrWt+eLH +Fvea+++LG  ++k  P+ i  +++v+ ++ +++ SHLQkYR++
  Bradi1g30813.2.p 194 KPRLRWTKELHGKFVEAIDRLGTnIDKVSPSGIFSMINVDYMSTKNIGSHLQKYRTH 250
                       79*******************96369*****************************97 PP
2Response_reg50.89.1e-184713325109
                       EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH.HTTESEEEESS--HHHHHH CS
      Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal.kaGakdflsKpfdpeelvk 109
                       + + a+dg+ +l++l + +  +Dl+++ + mp+md+l+l+++i++ ++ +p+iv++a+++ +++ +al + Ga  +l+Kp+  ++l +
  Bradi1g30813.2.p  47 SMTPAKDGKTVLRTLGKARepFDLVITELHMPDMDALDLIRRIAF-GMGIPVIVLSAYEDTKTVRNALiSSGACSYLAKPVCADQLKN 133
                       566799*********888889**********************99.55************888888888************9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-2410154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.6E-2911151No hitNo description
SMARTSM004482.7E-1712135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.80813139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1214133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.51E-1815139No hitNo description
SuperFamilySSF466895.2E-13192253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-20192253IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-17194250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAAKKKELWE GMRVLAVDED RVCLKILEAK LRRFNYDGEQ LTLADTSMTP AKDGKTVLRT  60
LGKAREPFDL VITELHMPDM DALDLIRRIA FGMGIPVIVL SAYEDTKTVR NALISSGACS  120
YLAKPVCADQ LKNIWQHVIR RKNELARNHK SCDNTVADQR VQRGIAEAEQ GAKSTRMNSR  180
TKRNDGHDSN SGKKPRLRWT KELHGKFVEA IDRLGTNIDK VSPSGIFSMI NVDYMSTKNI  240
GSHLQKYRTH LKRSSDPKAR AAIKWTSCYN ISNDPPEIFR HHHEHQMWPA SSIFASSSSN  300
NRFATPSIQP MTINGGSTFK GVLPVLPSES CKSKDHAEAL RGLLVKTNQR KASSHLEYSF  360
GNLIDERMEP VNSFRPVQLP QLINQSSVLT NAPATSLVGA FGNASKFPNL VRNFNNFWQT  420
AASSKFHKDG TSLGPSKANG NIPKINQHAS FASASSGQIQ MSLNGLQNQQ VPNAMAAFIS  480
NTTPVAGFNQ QIAPLAIASS TSSVEMFNGN FLVNGISNKA ALPNIEASSS AVPAQMLNAG  540
DIVGTLHVQE GTADQQALDG QLNDNDEYSM DDIFSLLDQN VIEEDPLLKN SIEDDVLLKN  600
FIEDADPVKN SIVDDDILKN SIEDDGLLQS FFEDDGLLKN SIGDHDLLKK SIEDDTLLKN  660
FNEDDDLFDN FIEDDALIEN FNEDDPLLNG DWF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g30813.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3JXP10.0A0A0Q3JXP1_BRADI; Uncharacterized protein
STRINGBRADI5G12160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274825
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-49response regulator 10