PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g31700.1.p

Common Name

BRADI_1g31700, LOC100825273

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 295aa MW: 31731.5 Da PI: 6.3984

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g31700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2.1e-13	132	181	6	55
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 r rr+ +NRe+ArrsR+RK a++ Le v++L++e +L k+l e +++ Bradi1g31700.1.p 132 RIRRMVSNRESARRSRRRKHAQLTDLELQVEQLKSESASLFKQLTEASQH 181 89*************************************99777766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-12	127	191	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.185	129	180	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-11	132	181	No hit	No description
Pfam	PF00170	1.4E-10	132	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.7E-10	132	181	No hit	No description
PROSITE pattern	PS00036	0	134	149	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKKCASELEL EAFIRQHLAA ERNRPSPGTD AGVFSSTHGG GLPVPGLCFG DSQKALELEG 60 SDAGHQWWSD GVCAPHPAVS STMGSQTAAV SASPRETTSG NQALESESES GSESLIDIEG 120 GQCNRKSTDT MRIRRMVSNR ESARRSRRRK HAQLTDLELQ VEQLKSESAS LFKQLTEASQ 180 HFTSAVTDNR ILKSDVETLR VKVKMAEDMV ARTAMSCNVG QLGSAPFLNS RKMCQALDML 240 TATGLDLPGN HALFKDPTPA RQVQTSTVQS TASLESLDNR MSSEVTSCAG DMWP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g31700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240308.1	0.0	bZIP transcription factor RISBZ5 isoform X1
Swissprot	Q654B3	3e-85	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	I1GVU4	0.0	I1GVU4_BRADI; Uncharacterized protein
STRING	BRADI1G31700.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-26	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Bradi1g31700.1.p
Entrez Gene	100825273

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]