PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g32330.2.p
Common NameBRADI_1g32330, LOC100832932
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 335aa    MW: 35899.4 Da    PI: 6.3171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g32330.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-1270114147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Bradi1g32330.2.p  70 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114
                       789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-1664120IPR009057Homeodomain-like
PROSITE profilePS5129414.1865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-668120IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1868117IPR006447Myb domain, plants
SMARTSM007176.5E-1069117IPR001005SANT/Myb domain
PfamPF002495.0E-1070114IPR001005SANT/Myb domain
CDDcd001671.35E-772115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVSMSATPKP LEAAAAVVAG GGGGGDGAKA SGKQPPPPQQ QELVLAAPMA VPAEEEARKV  60
RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK  120
NGTGEHLPPP RPKRKAAHPY PQKASKSAPQ AVSSQQPPLL TATRDQEGVM PMDTSIVVPN  180
TSANAAVPSW DNALVPFSAD HTQGPGAGVA TNNCSSSIES QSGTWPTSEA VEQENVLPPL  240
RAMPDFSQVY NFLGSVFDPD TSGHLQRLKA MDPIDMETAV LLMRNLALNL TSPDFEAHRK  300
LLSSYGSDGD QIKSEGLENI GSQSCHLPSM VTSE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g32330.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240582.10.0protein REVEILLE 8 isoform X2
SwissprotQ8H0W36e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0Q3NHY10.0A0A0Q3NHY1_BRADI; Uncharacterized protein
STRINGBRADI1G32330.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-81MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]