PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g33160.1.p
Common NameBRADI_1g33160, LOC100824778
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 707aa    MW: 75782 Da    PI: 7.8562
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g33160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.3e-24136237199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF+  +
  Bradi1g33160.1.p 136 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFM--R 224
                       89****************************996555555..8999*********************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       ++++ l+v+++r+
  Bradi1g33160.1.p 225 TENGDLCVGIRRA 237
                       588999****997 PP
2Auxin_resp117.79.6e-39299382183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+++++F+vvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Bradi1g33160.1.p 299 AANLAASGQPFDVVYYPRASTPEFCVKAGAVRAAMRTQWCPGMRFKMAFETEDSSRISWfMGTVSAVQVSDPIRWPNSPWRLLQ 382
                       7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-37130241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-29134238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-21135236No hitNo description
PROSITE profilePS5086313.126136238IPR003340B3 DNA binding domain
PfamPF023621.3E-22136237IPR003340B3 DNA binding domain
SMARTSM010194.8E-22136238IPR003340B3 DNA binding domain
PfamPF065074.6E-33299382IPR010525Auxin response factor
PROSITE profilePS5174521.063624704IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MITFVDSAAG ERERGGDDGR CLDPQLWHAC AGGMVQMPPV SSKVYYFPQG HAEHAQCGGG  60
DFPPGAGAGR GIPALVLCRV AGVHFMADPD TDEVFAKIRL VPARPHEQPG GDAADDGGGI  120
NGAAAGHAEA EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVLAKD  180
VHGVVWKFRH IYRGTPRRHL LTTGWSSFVN QKKLVAGDSI VFMRTENGDL CVGIRRAKKG  240
GIGGPELLPP PPPPPGTNYG GFSMFLRGEE DGSNKMMAAA AAARGKARVR VRPEEVAEAA  300
NLAASGQPFD VVYYPRASTP EFCVKAGAVR AAMRTQWCPG MRFKMAFETE DSSRISWFMG  360
TVSAVQVSDP IRWPNSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPA IHLAPFSPPR  420
KKLCVPFYPE LPLDGQFPAP MFHGNPLGRG GVGPMCYFPD GTPAGIQGAR HAQFGISLSD  480
LHLNKLQSSL SPHGLHNQID HGAQPRIAAG LIIGHPKARD DISCLLTIGN HQNSKKSDGK  540
KAAPQLMLFG KPILTEQQIT LGNAGGFSPT SARKSPSDGS AEKTANNSDL SSPRSNQNGT  600
TENLSCGGVP LCQDSKVLDL GLETGHCKIF MQSEDVGRTL DLAAVGSYDE LYRRLADMFG  660
IEKAELMRQV FYRDAAGALK HTGDEPFSDF TKTARRLTIL TGTGGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-78340332388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g33160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563445.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLI1GWC10.0I1GWC1_BRADI; Auxin response factor
STRINGBRADI1G33160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]