PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g33550.1.p
Common NameBRADI_1g33550, LOC100831216
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 189aa    MW: 20180.2 Da    PI: 4.9256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g33550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-182069255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +gr++AeIrdp++   ++ ++lg+f++ae+Aa+a++ a+++l+g
  Bradi1g33550.1.p 20 RYRGVRKRP-SGRYAAEIRDPTK---KTPIWLGTFDSAEDAARAYDTAARNLRG 69
                      59*******.7*********864...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-302078IPR001471AP2/ERF domain
PfamPF008477.6E-112069IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-212078IPR016177DNA-binding domain
PROSITE profilePS5103221.7732077IPR001471AP2/ERF domain
CDDcd000187.07E-272077No hitNo description
SMARTSM003805.2E-342083IPR001471AP2/ERF domain
PRINTSPR003674.7E-82132IPR001471AP2/ERF domain
PRINTSPR003674.7E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRKAKPPQPQ PQASPKVEIR YRGVRKRPSG RYAAEIRDPT KKTPIWLGTF DSAEDAARAY  60
DTAARNLRGP TARTNFPSAT PLPRPPAAAA TSSHSSTVES WSGGAPRAPA VARSAAPTDI  120
TGEEEEEEED CRSYCGSSSS VCEDDGDDAA ASRSPLPFDL NMPPPQDGAD ASAEADQMSF  180
RYDTLLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1920821477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g33550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3600183e-82AK360018.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108I12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563465.11e-133ethylene-responsive transcription factor 3
TrEMBLI1GWG71e-131I1GWG7_BRADI; Uncharacterized protein
STRINGBRADI1G33550.11e-132(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-18ethylene responsive element binding factor 3