PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g34842.1.p

Common Name

BRADI_1g34842, LOC100834369

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 283aa MW: 30713.8 Da PI: 8.0341

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g34842.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5e-16	22	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW+++E+e+++da ++G + Wk+I +++ ++t q++s+ qky Bradi1g34842.1.p 22 RERWSPDEHERFLDAMLRFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 66 78****************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-17	16	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.406	17	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-9	20	73	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-10	21	69	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.4E-16	21	69	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-13	22	66	IPR001005	SANT/Myb domain
CDD	cd00167	3.05E-8	24	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEQTPPGAGK KARKPYTITR PRERWSPDEH ERFLDAMLRF GRDWKKIEEH VRTKTTVQIR 60 SHAQKYFLKV QKLGLAAGLP PHHPIRSLGV AQSTAAGSGA VPSPMMVLHG QPQECPPGVL 120 VQSSIGWSCP GLLPSNEMQS SNWEGTSGPS SAWVSHGGNQ PEPTHPGGSS SSSSMGAPPG 180 CGNTSMGWVG TSSASDAEED TIPLPLSPDD MHFAQVYRFV GDVFDPATPC QIEAHLQRLK 240 DMDAITVKTI LLVLRNLEAN LTAPQFEPIR RLLSRYDPGR QL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g34842.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227459.1	0.0	protein REVEILLE 5 isoform X1
TrEMBL	A0A0Q3H4R9	0.0	A0A0Q3H4R9_BRADI; Uncharacterized protein
STRING	BRADI1G34840.1	1e-141	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70
Representative plant	OGRP928	15	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	6e-47	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Bradi1g34842.1.p
Entrez Gene	100834369