PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35400.1.p
Common NameBRADI_1g35400, LOC104582137
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 213aa    MW: 22946.2 Da    PI: 9.3358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-072974251
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaark 51
                      + kGV     +g+++AeI+     + + ++++lg+f + + Aa a++ a++
  Bradi1g35400.1.p 29 KLKGVKSLG-KGKYAAEIWM----KeVGRTVWLGTFPSLKLAACAYELAAR 74
                      678887566.7*********....4455*******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.6942988IPR001471AP2/ERF domain
SMARTSM003804.8E-92994IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-92988IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-123088IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAEIAKQAAE EAASWEDMCR AMGGPPAKKL KGVKSLGKGK YAAEIWMKEV GRTVWLGTFP  60
SLKLAACAYE LAARGILWRG RKASPNFEVI PSPALRREFE EELDKQELHH RGHEGSRRRP  120
ACLVHFRPAA NLFGPPITVV RAPVQAPAES CVSTTLETGP EASSSSSAGE GQRASSGRRA  180
FMAPMLNPNL TFVAEPVTGD NFTTDAWSRG VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229787.11e-154ethylene-responsive transcription factor CRF6
TrEMBLI1GX361e-153I1GX36_BRADI; Uncharacterized protein
STRINGBRADI1G35400.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3714723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-06DORNROSCHEN-like