PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35410.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 225aa    MW: 24059.3 Da    PI: 7.9296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24.2e-082873251
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                      + +GV     +g+++AeI++    +    ++++lg+f + + Aa a++ a++
  Bradi1g35410.1.p 28 KLRGVKSLG-KGKYAAEIWV----K-EleRTVWLGTFPSLKLAACAYELAAR 73
                      668887555.7*********....3.245*******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.9052887IPR001471AP2/ERF domain
SMARTSM003801.1E-82893IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-82877IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-122987IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGELAKQAAE AASWEDMCRA MGSRPTKKLR GVKSLGKGKY AAEIWVKELE RTVWLGTFPS  60
LKLAACAYEL AARGILSQGR KASPNFEVLP SPALRLEFED ELDKQELHHR KGYGPRPACL  120
VRFRPEPAES FDPASLYIAP VQAPAESCVS TTLKTGPGAS TSSSSGEGQS ASGGPFKAPM  180
FNPNVTFLAE SVTGDNFTAD ALSRGGLDLL TDPPIYRFIS SSIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229789.11e-150ethylene-responsive transcription factor CRF6
TrEMBLA0A2K2DMU21e-162A0A2K2DMU2_BRADI; Uncharacterized protein
STRINGBRADI1G35410.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3714723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-09cytokinin response factor 4