PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35420.2.p
Common NameLOC104582140
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 165aa    MW: 17875.5 Da    PI: 7.0893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35420.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.42e-091457451
               AP2  4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51
                      kGVr    +gr++AeIrd +       ++++lg+f + + Aa a++ a++
  Bradi1g35420.2.p 14 KGVRTLA-NGRYAAEIRDkV-----AgRKVWLGTFPSLKLAACAYELAAR 57
                      8999555.9*********33.....35********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-131173No hitNo description
PROSITE profilePS5103213.7881271IPR001471AP2/ERF domain
SMARTSM003801.5E-111277IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-111371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-151472IPR001471AP2/ERF domain
PfamPF008472.1E-41457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MCQAFGGEPK KNLKGVRTLA NGRYAAEIRD KVAGRKVWLG TFPSLKLAAC AYELAARGML  60
SGGRHAVPNF QQTPSPALRA EFDDELAAQA LRYREADGGG RPVPACLLRF ARVPVPPVEE  120
FPEQPPFTVE GPGCEITFVR SIPPEPVYIE AVEESYLATP TCTW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35420.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229790.11e-117dehydration-responsive element-binding protein 2A
TrEMBLA0A0Q3NJI31e-115A0A0Q3NJI3_BRADI; Uncharacterized protein
STRINGBRADI1G35420.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4986822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-10DORNROSCHEN-like