PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35588.1.p
Common NameBRADI_1g35588
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 266aa    MW: 30090.8 Da    PI: 10.4956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35588.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-169100297
                       EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       +k l ++d l++  +++p kf++eh    ++ ++s+t ++ ++ ++ W+v+l  +++++ +++++GW +F  a++L +g ++vF+++g++ f 
  Bradi1g35588.1.p   9 IKLL-QPDDLEK--MRVPDKFVQEHlteTESCPSSQTAIILSPLSKFWRVEL--ERGQSDVLFKGGWARFLMAHDLSQGNILVFRYEGNMVF- 95 
                       4444.6777766..79*********99855667999****************..**********************************9999. PP

                       .EEEEE CS
                B3  92 lvvkvf 97 
                         v vf
  Bradi1g35588.1.p  96 -SVEVF 100
                       .66655 PP
2B347.63e-15174256286
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       fk+ ++ ++lks  l + ++f++++g++++++++l+    s rsW+v ++ + +  +y+ +  Wk+F+++n+LkegD ++F  ++
  Bradi1g35588.1.p 174 FKKQINRYSLKSF-LAVKRTFCSSIGLVSACTIKLQTSMDSTRSWSVPFN-TANTYGYITGPRWKRFCRDNKLKEGDLCTFNIVK 256
                       5777899999998.999***********99977777666888*******4.4444569999********************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-204105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.215103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-205109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-166100No hitNo description
SMARTSM010198.2E-128103IPR003340B3 DNA binding domain
PfamPF023623.8E-13999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-17170264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-14170264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955172265IPR003340B3 DNA binding domain
CDDcd100173.38E-7172252No hitNo description
SMARTSM010190.0024174265IPR003340B3 DNA binding domain
PfamPF023621.9E-11175256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MFKNRPRFIK LLQPDDLEKM RVPDKFVQEH LTETESCPSS QTAIILSPLS KFWRVELERG  60
QSDVLFKGGW ARFLMAHDLS QGNILVFRYE GNMVFSVEVF LQNGCLKEYT RAGALILTDD  120
PNGPRTGTPQ SGNELVVATA SKKRKYTKRV VSPNSANKVG SQCKLANTLR KPSFKKQINR  180
YSLKSFLAVK RTFCSSIGLV SACTIKLQTS MDSTRSWSVP FNTANTYGYI TGPRWKRFCR  240
DNKLKEGDLC TFNIVKTTVW HVVIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35588.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229793.10.0putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL75e-87Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A0Q3H4460.0A0A0Q3H446_BRADI; Uncharacterized protein
STRINGBRADI1G35587.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-14B3 family protein