PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g35990.2.p

Common Name

BRADI_1g35990

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 229aa MW: 23597.6 Da PI: 9.9111

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g35990.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	151	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Bradi1g35990.2.p 151 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 198 8*************************94....22445556666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.81E-9	145	202	No hit	No description
SuperFamily	SSF47459	1.44E-15	145	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	147	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-15	147	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-7	151	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRRPSPPPAA GGEIQALAVA PASAAGSSSS TTTTGGGGSF TALLGLPMSQ AMELLLPPSA 60 PPPPTFPSDP SLVDRAARFS AFASSNSPSP TPPPPPPAAK RKADHAADRA SKGKKGKTTA 120 GGSDEKDAGG GEDEKPAYVH VRARRGQATD SHSLAERARR EKINARMELL KELVPGCSKV 180 SGTALVLDEI INHVQSLQRQ VEYLSMRLAA VNPRVDFGGL DSFLTSEV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g35990.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227502.2	1e-160	transcription factor bHLH48
Swissprot	Q8VZ02	9e-60	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0Q3H4C2	1e-160	A0A0Q3H4C2_BRADI; Uncharacterized protein
STRING	BRADI1G35990.1	1e-159	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	4e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi1g35990.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]