PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g37800.1.p
Common NameBRADI_1g37800, LOC100833334
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 510aa    MW: 55405.2 Da    PI: 6.1512
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g37800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.5e-084394771854
                       HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  Bradi1g37800.1.p 439 MFENflRPYPKDNEKDMLAARSGLSRSQVSNWFINARVR 477
                       57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.3E-15247376IPR006563POX domain
PROSITE profilePS5007111.758418481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-25420493IPR009057Homeodomain-like
SMARTSM003895.9E-7421485IPR001356Homeobox domain
CDDcd000862.07E-11421482No hitNo description
SuperFamilySSF466891.2E-15421490IPR009057Homeodomain-like
PfamPF059201.0E-15438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSSSDPSYQQ LGLDAISTCF IPSSSGSMMM CSSEAPFFHP SIVVPHDASF LSGSGSGVGA  60
DVAAHYNYMA NDAMETDEDA YAGAESCSTV HSMSMLPAFA AGPLGFFQYG GPADVTIAQP  120
PSRMSKLITG EPHCNSWLYD GPSAVSIHEP YYLAPFSGAG SFPAASGLSL RLGAALSSSV  180
TMASLPEQSS DVSCSGLTHA NSEGFGYQQQ PETTVKAHAE SDDGMPMPFQ LPPYPEMYST  240
PPQLSQVLPR SRYAHVAQEL LNGFAACLLN DVADHNISDF GPGNGGIGSE ASSNKLMLPS  300
IEQRQDDVRG DLLRLLQLMD QRCNRCFDDI QATASRFSSM VAHSGGGGGG GAIVAAPRFA  360
HRAVWATYQR LRKRITGMMV AVAQREQQPS SLADKERRWE SSFIQKHWAL QQLRRGDQQS  420
WRPQRGLPEK SVAVLKAWMF ENFLRPYPKD NEKDMLAARS GLSRSQVSNW FINARVRLWK  480
PMIEEMYEEL KRSSGGREVE HLSSKDVVC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g37800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5466451e-163AB546645.1 Triticum aestivum WBLH2-2 mRNA for BEL1-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227597.10.0BEL1-like homeodomain protein 2
TrEMBLI1GXY40.0I1GXY4_BRADI; Uncharacterized protein
STRINGBRADI1G37800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-48homeobox gene 1