PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38140.1.p
Common NameBRADI_1g38140, LOC100822722
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 253aa    MW: 26937.1 Da    PI: 6.5338
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.67.1e-3213101299
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y+++ed+ ++ +i w   +nsfvv d+  f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll
  Bradi1g38140.1.p  13 FVWKTYRMVEDPGTDGVIGWGPANNSFVVADPFVFSQTLLPTHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHGSFLRGQTHLL 96 
                       9********************999*****************************************999.........**************** PP

                       XXXXX CS
      HSF_DNA-bind  95 ekikr 99 
                       ++i r
  Bradi1g38140.1.p  97 RNIVR 101
                       ***88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-519102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3310101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3710101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-2913101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSVGGGGAAA APFVWKTYRM VEDPGTDGVI GWGPANNSFV VADPFVFSQT LLPTHFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFAHGSFLR GQTHLLRNIV RGGGGGSKRK DAAAADATDQ  120
DMTMVATEVV RLKKEQRTID DRVAAMWRRV QETERRPKQM LAFLLTVVGD RDTLLRLVSG  180
NDGAGDEEPV EGGEKRARLR LDGPEAADFA GFYGVGGDAF VNQLAVDVAA GAGSSVGGAA  240
GSSFGFGGDS GY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-26410119128Heat shock factor protein 1
5d5v_B8e-26410119128Heat shock factor protein 1
5d5v_D8e-26410119128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485381e-176AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence.
GenBankAK3544351e-176AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06.
GenBankAK3581361e-176AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14.
GenBankAK3703991e-176AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13.
GenBankHM4460411e-176HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563770.10.0heat stress transcription factor C-2b isoform X2
SwissprotQ0DBL61e-108HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLI1GY320.0I1GY32_BRADI; Uncharacterized protein
STRINGBRADI1G38140.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-60heat shock transcription factor C1