PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38577.1.p
Common NameBRADI_1g38577
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 180aa    MW: 20058.6 Da    PI: 11.2675
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38577.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP42.88.9e-141251643770
           E2F_TDP  37 e.dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                       e ++++k+RR+YDi+NVL++lnliek     ++k+++rw 
  Bradi1g38577.1.p 125 EsNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWL 164
                       2599**********************99999999999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.1E-6102165IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-12118165IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-7123164IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-11124164IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MPRRAGHHAS IAPAPAPLHS PAPPPSIRTL SPAIRHRGWE GRFGRLGILR RLRNWCLGGS  60
STLDLIWRAW GRVMCCCGAP PPLSSMAGGG AEVCGSAPTY CKFPNELRRS HLMRLQGCSL  120
ERHAESNMRT KVRRLYDIAN VLSSLNLIEK TQQVDSRKPA FRWLTFPFIL ICINWCMTM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38577.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753585e-59AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3JKE91e-127A0A0Q3JKE9_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.15e-17DP-E2F-like 1