PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g41684.2.p

Common Name

BRADI_1g41684

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 256aa MW: 29011.8 Da PI: 9.4464

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g41684.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.7	4.6e-07	9	71	2	47
SSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 ++WT+eE+ +l+ a + ++ W+ Ia++ + +R +kq+k +++ + Bradi1g41684.2.p 9 MAWTPEEERRLASAWLENSNDpidgnnkkikkYWDDIAACYNsttpsnRKRDAKQLKQHFHRV 71 68********************************************99********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-4	10	70	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
GTSRTAQHMA WTPEEERRLA SAWLENSNDP IDGNNKKIKK YWDDIAACYN STTPSNRKRD 60 AKQLKQHFHR VKTKINAFHG EWCSLNKVYK SGYSDDQLTD MAMEKYEDHG KWLAVVRKLN 120 GEEEKSPSVG INVTSHVIDL EKEERPIGRH KAKAERAGKS KAREAPEGVI VLGEKLDKFI 180 EVQATSRQER QKVIESQQRM SSDKVDAARL AKETKMLVVY EKLILADTSL LDEESKAARV 240 RALASMESIL FPKGD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g41684.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237543.1	7e-74	uncharacterized protein LOC100844493
TrEMBL	A0A2K2DNQ7	0.0	A0A2K2DNQ7_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI2G47930.1	1e-120	(Brachypodium distachyon)

Link Out ? help Back to Top
Phytozome	Bradi1g41684.2.p