PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g42440.1.p
Common NameBRADI_1g42440, LOC104582191
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 241aa    MW: 25869 Da    PI: 5.3461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g42440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07153196755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ + RR+ri +++  L+el+P+       K++ +++L kA+ Y+k +q
  Bradi1g42440.1.p 153 QAAKSRRERIGERLRALQELVPNG-----SKVDMVTMLDKAITYVKFMQ 196
                       66799******************5.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-13144208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-12145204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.869146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-11147199No hitNo description
SMARTSM003533.0E-9152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-5153196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALVGQATKL CYDGFAGDGV PPFMDAACLA FDHGYDYNNP HAWEFPTGAE PGNSSAFDVA  60
WTGVSSTSPV LTFDAAEWMD ATATDRLSSY SPSAATVPAS YKRPRAHVQP QQEAEEQESI  120
TPNPKKQCGD GKVVIKSSAA ATGTSPRKEP QSQAAKSRRE RIGERLRALQ ELVPNGSKVD  180
MVTMLDKAIT YVKFMQLQLT VLETDAFWPA QGGAAPEISQ VKAALDAIIL SSSQKPRQWS  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g42440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229851.11e-179transcription factor bHLH83
TrEMBLI1GYN51e-178I1GYN5_BRADI; Uncharacterized protein
STRINGBRADI1G42440.11e-178(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-42ROOT HAIR DEFECTIVE6