PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43470.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 164aa    MW: 17376.2 Da    PI: 4.6383
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43470.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.77.1e-2422113796
             NF-YB   7 flPianvsrimkkvlPan..akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                        +P + ++ im ++l ++  a+is  a + v+ cv efi+ vts a+d c+++++ t+++ddl+ a+ +lGf +yv pl+ yl++yre++g 
  Bradi1g43470.3.p  22 KFPASYLTGIMARALSQHpgARISGGASDAVDRCVEEFIAVVTSAAADWCREQNKTTLDSDDLINAMEDLGFYQYVGPLEDYLRQYREFQGR 113
                       578889999******987669*******************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.8E-2319114IPR009072Histone-fold
SuperFamilySSF471131.73E-2123114IPR009072Histone-fold
PfamPF008082.4E-83988IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEGRGQANGP GNNAREGNRR TKFPASYLTG IMARALSQHP GARISGGASD AVDRCVEEFI  60
AVVTSAAADW CREQNKTTLD SDDLINAMED LGFYQYVGPL EDYLRQYREF QGRQPAPPTP  120
AALVTTVEMP PPQVPSGAAA ASTSRMPPAS AAAPAHARDD VDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-1523109993NF-YB
4awl_B6e-15231091094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-15231091094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43470.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229873.21e-117nuclear transcription factor Y subunit B-1
TrEMBLI1GZ051e-116I1GZ05_BRADI; Uncharacterized protein
STRINGBRADI1G43470.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3715422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.31e-21nuclear factor Y, subunit B1