PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g43480.1.p

Common Name

BRADI_1g43480

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YB

Protein Properties

Length: 219aa MW: 23397.6 Da PI: 6.0146

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g43480.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	138.5	1.8e-43	22	118	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr++Pianv+rim+++lP +akis++ake++qe sefisf+t+ea+++c + +rk ++++d+lwa+ +lGf+dyv+p+++yl++ r++ Bradi1g43480.1.p 22 VREQDRLMPIANVTRIMRRMLPPHAKISDNAKELIQESTSEFISFLTGEANERCLKSRRKILTAEDILWAMDNLGFDDYVQPFTAYLQRMRDI 114 69******************************************************************************************* PP NF-YB 94 egek 97 e+++ Bradi1g43480.1.p 115 ENNN 118 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-41	21	117	IPR009072	Histone-fold
SuperFamily	SSF47113	4.35E-33	25	118	IPR009072	Histone-fold
Pfam	PF00808	7.0E-23	29	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-11	56	74	No hit	No description
PRINTS	PR00615	3.6E-11	75	93	No hit	No description
PRINTS	PR00615	3.6E-11	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MENSGGAPNT GAPEEVPPVV EVREQDRLMP IANVTRIMRR MLPPHAKISD NAKELIQEST 60 SEFISFLTGE ANERCLKSRR KILTAEDILW AMDNLGFDDY VQPFTAYLQR MRDIENNNGV 120 GVVNNRLAAA TGPRAPAPAP PLVPVPVAAA AQGLMQMQRG AMYAPRPPAP VQQQGYAIGA 180 MPLQVRAPPP PLGGQRPVGD GEGSSRGEKP ADGEGSSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-46	22	113	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g43480.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229872.1	1e-110	nuclear transcription factor Y subunit B-8
Swissprot	Q84W66	7e-49	NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBL	I1GZ06	1e-155	I1GZ06_BRADI; Uncharacterized protein
STRING	BRADI1G43480.1	1e-156	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29183	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-47	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Bradi1g43480.1.p

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Li D, et al. MYB89 Transcription Factor Represses Seed Oil Accumulation. Plant Physiol., 2017. 173(2): p. 1211-1225 [PMID:27932421] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087]