PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43900.4.p
Common NameBRADI_1g43900, LOC100838650
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 366aa    MW: 40407.9 Da    PI: 7.9937
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-1077118445
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k err+++NReAAr+sR RKka++++Le    +L +  ++L
  Bradi1g43900.4.p  77 QKIERRLAQNREAARKSRIRKKAYVQQLESSRSKLAQLEQEL 118
                       588**************************8766666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-871120No hitNo description
SMARTSM003382.5E-774170IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5376120IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.84E-778121No hitNo description
CDDcd147087.95E-2278130No hitNo description
PfamPF001706.9E-778118IPR004827Basic-leucine zipper domain
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141443.0E-29160236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MTAPGALTEV DRFCLPRASA QFENWGDSGI VVTSPLTETS TDLDDSADKR LVSMGGGGGA  60
QRWVGGCVDT SERKGDQKIE RRLAQNREAA RKSRIRKKAY VQQLESSRSK LAQLEQELQR  120
ARQQGIFVGS GGSSDHGCST GGALAFDLQY ARWLDGYQYH VNDLRVGVHA NISDDELRIL  180
VEAVMLHYDH LFRLKSIATK SDVFHVMSGM WMSPAERFFM WLGGFRSSEL LKVLASQLEP  240
LTDQQLMGIC NLQQSSLQAE DALSQGMEAL QQALAETLAF AAAVVPSTGS GDNVTNYMSQ  300
MAIAMAKLST LENFLRQGDL LRQQTLQQMH RILTTRQAAR ALLVISDYFS RLRALSSLWL  360
ARPRA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229877.20.0transcription factor TGAL3
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0Q3L6230.0A0A0Q3L623_BRADI; Uncharacterized protein
TrEMBLI1GZ560.0I1GZ56_BRADI; Uncharacterized protein
STRINGBRADI1G43900.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-107bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]