PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g45510.2.p
Common NameBRADI_1g45510
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 292aa    MW: 32572.3 Da    PI: 6.3032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g45510.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-183984148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Bradi1g45510.2.p 39 RGKFSQEEEQTILQLHSILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 84
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-241993IPR009057Homeodomain-like
PROSITE profilePS500904.2861933IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-111946IPR009057Homeodomain-like
PROSITE profilePS5129427.8143488IPR017930Myb domain
SMARTSM007171.2E-173886IPR001005SANT/Myb domain
PfamPF002493.1E-173984IPR001005SANT/Myb domain
CDDcd001676.01E-144184No hitNo description
Gene3DG3DSA:1.10.10.601.3E-234785IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MHMPFNEILL GIFCVAGLNR CGKSCRLRWT NYLKPDIKRG KFSQEEEQTI LQLHSILGNK  60
WSAIAKHLPG RTDNEIKNFW NTHLRKKLIK MGIDPMTHRP RTDFFSALPQ LIALANFRQF  120
LEQQPLDDQT AWLQSEAVQA AKLQYMQSLL HSAASIVASP TTTSSSLNPL TTDLEQISFL  180
SPPQMLSPRV LEGIGGTELA GQAPQNQMPS ITYDHSIGNI NVKSDEQRHG EGENISQKRM  240
LLSENSLPPL ADMPASNTCD ISTSNCNCII SPLPSWSEIL LDEELMSDCL M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-21208840108B-MYB
1gv2_A8e-21208837105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g45510.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3304810.0KP330481.1 Triticum aestivum MYB transcription factor SM152-2 mRNA, complete cds.
GenBankKP3304820.0KP330482.1 Triticum aestivum MYB transcription factor SM152-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560902.10.0transcription factor MYB93
TrEMBLI1GZN90.0I1GZN9_BRADI; Uncharacterized protein
STRINGBRADI1G45510.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-70myb domain protein 93