PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g45517.1.p

Common Name

BRADI_1g45517, LOC100840502

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 228aa MW: 26375 Da PI: 9.6244

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g45517.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.4	2e-16	132	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +t+s+v+ +l lp +f++++ +k ++ ++l de+ + e + k++ l++GW++F+ +++L +gD +vF+l++r++f + Bradi1g45517.1.p 132 FVKPMTQSHVTGGFWLGLPTQFCRKYL-PK-RDERIILVDEEDDESETLYLALKRG----LSAGWRGFAIDHKLVDGDCLVFQLIERTKF--K 216 89**********************4.32.4457999998888888888555555....9**********************98888..8 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ Bradi1g45517.1.p 217 VYIIRE 222 988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-24	126	223	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-20	127	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.75E-26	130	221	No hit	No description
Pfam	PF02362	3.1E-14	132	222	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-19	132	223	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.66	132	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAGAIPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPAKSLKRK SRAQGEAGQD 60 VPLRRSGRVA SLPEQPKYRY EDSLAFEKKP RRTYSTRKDL TNRVYATDEA RDYTITKAEE 120 LQDKLGSDYP IFVKPMTQSH VTGGFWLGLP TQFCRKYLPK RDERIILVDE EDDESETLYL 180 ALKRGLSAGW RGFAIDHKLV DGDCLVFQLI ERTKFKVYII RESSYYE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g45517.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374346	9e-49	AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227844.1	1e-167	B3 domain-containing protein Os06g0194400
Refseq	XP_010227845.1	1e-167	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-122	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	I1GZP0	1e-165	I1GZP0_BRADI; Uncharacterized protein
STRING	BRADI1G45517.1	1e-166	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-57	B3 family protein

Link Out ? help Back to Top
Phytozome	Bradi1g45517.1.p
Entrez Gene	100840502

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]