PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g45812.1.p
Common NameBRADI_1g45807, VRT-2
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 24836.9 Da    PI: 6.258
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g45812.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.7e-261059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rie+   rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl  ++s
  Bradi1g45812.1.p 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS 59
                      8*********************************************9986 PP
2K-box53.88.4e-19861711698
             K-box  16 slqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        l+ e++k ++ +e+L      +Rh+ Ge+Le Ls+ eLqq+e++Le++l+++  +K++ +++qi+elq+k   l een +Lr+++
  Bradi1g45812.1.p  86 DLNVEHNKYNSLNEQLAessLRLRHMRGEELEGLSVGELQQMEKNLETGLQRVLCTKDQQFMQQISELQQKGTLLAEENSRLRSQM 171
                       45666666667777776444678************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.076161IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-29374IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
CDDcd002655.26E-321375No hitNo description
PRINTSPR004048.4E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.2987177IPR002487Transcription factor, K-box
PfamPF014866.4E-1791171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS  60
SMNEIIDKYS THSKNLGKSD QQPSIDLNVE HNKYNSLNEQ LAESSLRLRH MRGEELEGLS  120
VGELQQMEKN LETGLQRVLC TKDQQFMQQI SELQQKGTLL AEENSRLRSQ MPQVPKAGKM  180
TVVETENVAT EDVHSSESVM TALHSGSSHD NDDGSDISLK LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19173173MEF2C
5f28_B1e-19173173MEF2C
5f28_C1e-19173173MEF2C
5f28_D1e-19173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g45812.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0366480.0JN036648.1 Brachypodium distachyon VRT-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227855.11e-162uncharacterized protein LOC100821083 isoform X1
SwissprotQ69TG51e-120MAD55_ORYSJ; MADS-box transcription factor 55
TrEMBLA0A2K2DPM01e-161A0A2K2DPM0_BRADI; Uncharacterized protein
STRINGBRADI1G45807.11e-162(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]
  5. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]