PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g46100.1.p
Common NameBRADI_1g46100
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 183aa    MW: 19515.3 Da    PI: 9.5555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g46100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.6e-08100140954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P  a      +l+ a++Le+Av+Y++ L
  Bradi1g46100.1.p 100 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAVRYVRFL 140
                       699*****************966......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.19591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.35E-1094141No hitNo description
Gene3DG3DSA:4.10.280.108.3E-1196150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1296150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-1197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5101140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDPDMMNQEQ LMNTISQLDS ALAYLASPST SPPPQPLAPP QVHPPPITTM LVPVPVQPPW  60
AATRQLFGII DSDAAGAAAP SRRRRGTGAR VSGEPQSVAA RLRRERVSQR MRALQRLVPG  120
GARLDTASML EEAVRYVRFL KSHVQALEQL AAAAIAMHGR VEADGVAAGG FYDSSSSCPY  180
YA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g46100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046879e-73AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149629e-73AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126149e-73CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229905.21e-128transcription factor HEC2
TrEMBLI1GZV91e-127I1GZV9_BRADI; Uncharacterized protein
STRINGBRADI1G46100.11e-128(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-19bHLH family protein