PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g46160.1.p
Common NameBRADI_1g46160, LOC100827453
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 297aa    MW: 31959.9 Da    PI: 10.0513
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g46160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.43.1e-1698185396
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       +q+lw+e De++lL G i+f+a++g  p   d+ a++e +++s+s +  +  +  K++rLK Kf +             s++h+  + +ls  
  Bradi1g46160.1.p  98 AQKLWTEADEVALLNGAISFRARNGGPPRLpDMGALFESIRNSLSPHLDQAKMYYKLKRLKSKFFNSAPA-------GTSNPHELLVRGLSAD 183
                       79***********************977656**********************************98877.......4555666555566655 PP

            DUF573  95 iW 96 
                       +W
  Bradi1g46160.1.p 184 LW 185
                       55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.0E-1599185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPSSKRPSRA AMDDDAAAAD GLHPSSPRSK KRSSRSKARS GDRRSPNPNP RRRADYHGSE  60
PSRKSERKRK PRSFPDSAPL ALAVAAPASS SVGGHGAAQK LWTEADEVAL LNGAISFRAR  120
NGGPPRLPDM GALFESIRNS LSPHLDQAKM YYKLKRLKSK FFNSAPAGTS NPHELLVRGL  180
SADLWDTELA PPVEDDVVAE EEEDPEEGYT GADVVGAASL PLVSGLLGEY WRRNGSALSG  240
VSLEKGLALL GAEEGRVAEA KWRRQLDAEM RTQVRRHDLA KEVFGLLIDA VKGLGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15069RRRADYHGSEPSRKSERKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g46160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564112.10.0STOREKEEPER protein
TrEMBLI1GZW50.0I1GZW5_BRADI; Uncharacterized protein
STRINGBRADI1G46160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Representative plantOGRP1273145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.12e-09DNA-binding storekeeper protein-related transcriptional regulator