PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g47480.1.p
Common NameBRADI_1g47480, LOC100825990
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 154aa    MW: 16778.6 Da    PI: 7.7315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g47480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-19756255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +++GVr+++ +g+Wv+eIr+p     +  +r++lg+f tae+Aa+a+++a++ + g
  Bradi1g47480.1.p  7 RFRGVRQRH-WGSWVSEIRHP-----HlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                      69******9.**********8.....556**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.51E-28663No hitNo description
SuperFamilySSF541717.85E-20764IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-32764IPR001471AP2/ERF domain
PROSITE profilePS5103219.875764IPR001471AP2/ERF domain
SMARTSM003807.3E-34770IPR001471AP2/ERF domain
PfamPF008472.3E-11755IPR001471AP2/ERF domain
PRINTSPR003677.3E-11819IPR001471AP2/ERF domain
PRINTSPR003677.3E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPHLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR  60
TNFSSTGAGA GDPPPSSSFL SPALVAKLHR FNMASSTSQA ASAAAQRDHK QDGSSTGTSA  120
AAAGWSGGFL EEQYVEQMIE ELLDSNFSME ISY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-15663462ATERF1
3gcc_A8e-15663462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g47480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749422e-70EU974942.1 Zea mays clone 461426 ethylene response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561000.11e-110ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-49ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLI1H0E31e-109I1H0E3_BRADI; Uncharacterized protein
STRINGBRADI1G47480.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]