PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48002.1.p
Common NameBRADI_1g48002
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 292aa    MW: 31904.4 Da    PI: 4.7802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-071401741347
                       HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       vd+ + +G g+Wk I++++ ++Rt+ q+ s+ qk+
  Bradi1g48002.1.p 140 VDGLRAFGRGDWKNISKYFVTTRTPVQVSSHAQKF 174
                       899999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.74E-4133175No hitNo description
SuperFamilySSF466897.99E-9134180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-7135177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.6E-4138177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPKLHQEWT SFEVQEARSL IARLSINMID SYDADEKNKV HNHIVDALHG LFPWKTNEQV  60
TDFYVTLYAE MHMMQGQEDS HAGGGGMHTA CALPNHVNGS FGVPEEESGC ANGAQGVCAM  120
GDLAANSVFM VPEEEGEENV DGLRAFGRGD WKNISKYFVT TRTPVQVSSH AQKFFRRLKN  180
RALSNTQRHS INDDVDPYYA NTLTSESGSG AGQALTFTGL IHDPSIGLEA PTSSFVTLDN  240
IAQLLYSQQV VQQPLWSEQQ MMGSGAATMD GVGNFEPPCR QGSTYLPPRN G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229928.10.0uncharacterized protein LOC104582232
TrEMBLA0A0Q3NP910.0A0A0Q3NP91_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.13e-15MYB_related family protein