PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48580.1.p
Common NameBRADI_1g48580, LOC100823943
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 201aa    MW: 21742.8 Da    PI: 8.5008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.2e-28131391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.tksgyWkatgkdkev 92 
                       lp GfrF Ptdeel  +yL kk+ + +l+  ++i+ +d+ +++P dLp +  + + + +fFs+   +  +  r   a  ++g+Wka+g ++ v
  Bradi1g48580.1.p  13 LPNGFRFVPTDEELTIHYLYKKAFSLPLPN-NIIAVADLARIHPGDLPGN--EAHGDKFFFSRPVPRCGRRARGAAApGAAGVWKASGAEELV 102
                       699************************999.89***************32..3445789**99998876655555532449**********99 PP

               NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       l++ ++  + lk+tLvf++ + +   +t+Wvmheyrl
  Bradi1g48580.1.p 103 LVSpRRVPTALKQTLVFFSVDGRGVARTRWVMHEYRL 139
                       99868888**********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-376165IPR003441NAC domain
PROSITE profilePS5100536.75513165IPR003441NAC domain
PfamPF023654.0E-1814139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MALPMAGGGL MGLPNGFRFV PTDEELTIHY LYKKAFSLPL PNNIIAVADL ARIHPGDLPG  60
NEAHGDKFFF SRPVPRCGRR ARGAAAPGAA GVWKASGAEE LVLVSPRRVP TALKQTLVFF  120
SVDGRGVART RWVMHEYRLH PNVLLATANN GRAVEDWVVC RVFQKATRAQ RRGDGNPPSP  180
ISSCLTEEIG DEDSDEEIAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-281117115171NO APICAL MERISTEM PROTEIN
1ut4_B3e-281117115171NO APICAL MERISTEM PROTEIN
1ut7_A3e-281117115171NO APICAL MERISTEM PROTEIN
1ut7_B3e-281117115171NO APICAL MERISTEM PROTEIN
3swm_A3e-281117118174NAC domain-containing protein 19
3swm_B3e-281117118174NAC domain-containing protein 19
3swm_C3e-281117118174NAC domain-containing protein 19
3swm_D3e-281117118174NAC domain-containing protein 19
3swp_A3e-281117118174NAC domain-containing protein 19
3swp_B3e-281117118174NAC domain-containing protein 19
3swp_C3e-281117118174NAC domain-containing protein 19
3swp_D3e-281117118174NAC domain-containing protein 19
4dul_A3e-281117115171NAC domain-containing protein 19
4dul_B3e-281117115171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561060.11e-146NAC domain-containing protein 83
TrEMBLI1H0S91e-145I1H0S9_BRADI; Uncharacterized protein
STRINGBRADI1G48580.11e-146(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-26NAC family protein