PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g49560.1.p
Common NameBRADI_1g49560, LOC100842630
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 221aa    MW: 23593.9 Da    PI: 5.2912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g49560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173788155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr++   grWv+e+r+p   +k+ r++lg+f +ae Aa+a++ a+++l+g
  Bradi1g49560.1.p 37 PVYRGVRRRGAAGRWVCEVREP---NKKSRIWLGTFASAEAAARAHDVAALALRG 88
                      68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-133788IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-203898IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-293898IPR001471AP2/ERF domain
SMARTSM003805.9E-2538102IPR001471AP2/ERF domain
PROSITE profilePS5103222.3263896IPR001471AP2/ERF domain
PRINTSPR003672.8E-53950IPR001471AP2/ERF domain
PRINTSPR003672.8E-56278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDHNHHYEDD GGGYATVTSA PPKRPAGRTK FRETRHPVYR GVRRRGAAGR WVCEVREPNK  60
KSRIWLGTFA SAEAAARAHD VAALALRGRA ACLNFADSAA LLAVDPATLR TPEDIRAAAI  120
RLAEATCPSA AAEAAASMSV AQSSSSPAPA MMMHQEEEEA AAQYDEYAAM CDLQDQHSYF  180
YGDIGGDWQQ QSSHFDGDDD GSSGGGCYGY GAGDVTLWSY *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g49560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0287541e-127EF028754.1 Triticum aestivum CBFII-5.3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564337.11e-161dehydration-responsive element-binding protein 1C
SwissprotA2Y8S62e-57DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV32e-57DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLI1H1451e-160I1H145_BRADI; Uncharacterized protein
STRINGBRADI1G49560.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1274245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-23dehydration response element B1A
Publications ? help Back to Top
  1. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  2. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  3. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  4. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]