PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g50237.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 841aa    MW: 95739.6 Da    PI: 4.2645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g50237.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18157247199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv       ++++l +p+ f  ++ ++ e+s  ++l+d sg++W+v l    +s +  + +GW++F +++++ +gDf+vF+++g+s+f   
  Bradi1g50237.4.p 157 FFKVV--MPGESTQQLKIPRAFK-KYLEN-ESSGVVSLRDASGNTWRVGL--VANSMELSFVRGWERFFSDHRIHVGDFLVFRYNGQSQF--S 241
                       77777..44666778*******6.88444.46679***************..9********************************99999..7 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v vf +
  Bradi1g50237.4.p 242 VLVFGR 247
                       777765 PP
2B348.21.9e-15723816297
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       fk+++ s v ++  +++p   + +++++k +++++tl d++g++W+v + y  r++ ++  +++GW  F   n+L+e D++vF++ ++s+   
  Bradi1g50237.4.p 723 FKAMKYSEVYTTYFMIIPEILV-KNSLPK-KDMQMTLWDPQGKTWDVSYVYqsRGGVCSAAFATGWGAFSVHNNLEEWDVCVFEVLDSSNI-- 811
                       6889999999999999999998.887775.789****************997677777799***********************6654544.. PP

                       EEEEE CS
                B3  93 vvkvf 97 
                       +v+v+
  Bradi1g50237.4.p 812 KVHVH 816
                       66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-24151250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-21152250IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-20155245No hitNo description
PROSITE profilePS5086314.522155248IPR003340B3 DNA binding domain
SMARTSM010191.6E-12157248IPR003340B3 DNA binding domain
PfamPF023628.3E-16157245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18717817IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-18718817IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182722819IPR003340B3 DNA binding domain
SMARTSM010193.1E-5722819IPR003340B3 DNA binding domain
CDDcd100171.91E-18723817No hitNo description
PfamPF023622.0E-13723817IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MVSSMQNVKV KEEKCNSMEN EKEMNMKEQR GRVNTQKAKK NKEEEQRNEE KGRLGSKTEM  60
MIEKEQRDMM DKEKAKKDKE EEQRKKEEKE REGCQLRETE EKKKEKKQRE RMDMEKETKD  120
KEDEQEKEVH EYRERKDKQY HERNEEEETT ENTFHHFFKV VMPGESTQQL KIPRAFKKYL  180
ENESSGVVSL RDASGNTWRV GLVANSMELS FVRGWERFFS DHRIHVGDFL VFRYNGQSQF  240
SVLVFGRSGC EVECAFLPQS YNDWVIEDDE GSMGINVDGT DPHEEDPRNM AKEKDGGDID  300
MNAGGTDLTR EDVGYTLAEG DDKVDMHTNR DVNNPQEEDA GNMAEENDGM DLDTNVGATN  360
LLEEDPRYTL AGHDKVDTGI NTYVTNPQEQ DAGNMAKEND GGGMGTNAGG TDVMEEDVGY  420
ALAKYDDKVD MDTSIDVTNT QELDACNVAG ENVGEDMDTN AHRTDLMDDQ DAGYALAEDD  480
KGDMDTIIDV TIPQKEDIVG AKSKASEEEE GNDRPMGRDD ALDTLQEKDV DGITNYPHGT  540
PQKEEYANYA HGNPPKEEEE EEEEENDDDD DVDVPIDDDE DDDDDDDDDD DDDSDTDGFG  600
IRNNRYRKID DIFAECGRLE AKKRKAMGKR PATPLSSSYK VASSSNANVK ETNTMVGSIV  660
PVRSRFDWTL FNESNNVPQL GKVFAKVQRV PEVTSQRRAV IEEEVEYAIE KASHFLSQRS  720
FSFKAMKYSE VYTTYFMIIP EILVKNSLPK KDMQMTLWDP QGKTWDVSYV YQSRGGVCSA  780
AFATGWGAFS VHNNLEEWDV CVFEVLDSSN IKVHVHRVVC EITPYIQRPP QLDLNSRSSC  840
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g50237.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314039.10.0probable ATP-dependent helicase PF08_0048
TrEMBLA0A2K2DQQ30.0A0A2K2DQQ3_BRADI; Uncharacterized protein
STRINGBRADI1G50240.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-13B3 family protein