PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g51730.1.p

Common Name

BRADI_1g51730, LOC104582266

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 166aa MW: 18069.4 Da PI: 5.2832

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g51730.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.5e-12	52	134	9	96
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 + ++++ +v+p +f ++ ++ + grsW +++ ++ + + + W +F+ +n+L+ gD +vF+l++ ++elv+ v Bradi1g51730.1.p 52 SRTQLRDMVIPARFQRRLPARRAG----AVVRCGGRSWAMNY--CGDTKVKRFDTAWAHFAADNRLRFGDACVFELVSGaGGRELVFEV 134 45556679****9888655433....455789****..666656668999*****************99776999888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.3E-17	40	138	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.02E-14	42	132	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.292	44	140	IPR003340	B3 DNA binding domain
CDD	cd10017	9.78E-13	45	138	No hit	No description
SMART	SM01019	0.0077	46	140	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-11	51	134	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MENSAAGSSW RQMPDVLIVK PSGEIIFPAS DQQQHETTPL SGDHPFFTAV LSRTQLRDMV 60 IPARFQRRLP ARRAGAVVRC GGRSWAMNYC GDTKVKRFDT AWAHFAADNR LRFGDACVFE 120 LVSGAGGREL VFEVQVLRGG GLPEPEPEEE DGVVAGKPIV IGDDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g51730.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024317071.1	1e-119	B3 domain-containing protein Os06g0112300
TrEMBL	I1H1W1	1e-118	I1H1W1_BRADI; Uncharacterized protein
STRING	BRADI1G51730.1	1e-118	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33
Representative plant	OGRP7665	9	16

Link Out ? help Back to Top
Phytozome	Bradi1g51730.1.p
Entrez Gene	104582266