PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g52000.1.p
Common NameBRADI_1g52000, LOC104582267
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 194aa    MW: 20500.1 Da    PI: 10.5858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g52000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.25.7e-2735135199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+kv tpsdv+k++rlv+pk+fae+h      g    +   l++ed +g  + W ++++y+++s++yv+tkGW++Fv++ +L +gD+v F++ 
  Bradi1g52000.1.p  35 FDKVVTPSDVGKLNRLVVPKHFAEAHfvvpgsG---GGAALLRFEDGRGkgKAWCFRFSYWGSSQSYVMTKGWSGFVRDRRLAAGDTVSFSR- 123
                       89************************9996432...46678*****77667****************************************4. PP

                       SSSEE..EEEEE-S CS
                B3  86 grsefelvvkvfrk 99 
                          + +l++  +r+
  Bradi1g52000.1.p 124 --AGHRLFIDCRRR 135
                       ..445667777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-3131141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2533130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-2233123No hitNo description
PROSITE profilePS5086313.71935136IPR003340B3 DNA binding domain
PfamPF023628.0E-2435135IPR003340B3 DNA binding domain
SMARTSM010192.0E-1635136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MALTAAARVS NSTGGEGGVS GSGNGVCGGV REHMFDKVVT PSDVGKLNRL VVPKHFAEAH  60
FVVPGSGGGA ALLRFEDGRG KGKAWCFRFS YWGSSQSYVM TKGWSGFVRD RRLAAGDTVS  120
FSRAGHRLFI DCRRRGSASG GSMAAAAAEA SRALDDVETT TTRRLMAGRR RVRLFGVDVE  180
VTDEPLDLQL GLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-39311354113B3 domain-containing transcription factor NGA1
5os9_B2e-39311354113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g52000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046989e-33AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149649e-33AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126169e-33CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751764.11e-137B3 domain-containing protein Os06g0107800
SwissprotQ5VS553e-43Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLI1H1Z31e-135I1H1Z3_BRADI; Uncharacterized protein
STRINGBRADI1G52000.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-36B3 family protein