PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g52187.3.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 294aa MW: 33710.8 Da PI: 6.7954

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g52187.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.1	1.8e-32	22	97	53	129
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLv+ykgrap+g+k+dW+mheyrle Bradi1g52187.3.p 22 EEQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIYA-KHCLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 97 45679***********************************.899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.637	1	117	IPR003441	NAC domain
Pfam	PF02365	1.2E-15	17	96	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-37	23	117	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MIMCTFLHSF LYAEKCRIGP EEEQSDWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP 60 IYAKHCLVGM RKTLVYYKGR APNGHKSDWI MHEYRLETNE NGPPQEEGWV VCRVFKKRLP 120 ATRRDLDHDA PCWYVDDDGP FMHDLNAPTM NGIMPPHHSM AALQEQHLQM LNNTYKRELK 180 LQFQMPNHHH HDVLSTIIPH DLETSSFHSL LVSPDDHQVN AHHHVQLIDH AAVDQSTTDW 240 RVLDKFVASQ LSNDATKGVD YTDGGILQLN EKQEGATDYA STSTSSSQVD PWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-30	24	123	70	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-30	24	123	70	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-30	24	123	70	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-30	24	123	70	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-30	24	123	73	174	NAC domain-containing protein 19
3swm_B	4e-30	24	123	73	174	NAC domain-containing protein 19
3swm_C	4e-30	24	123	73	174	NAC domain-containing protein 19
3swm_D	4e-30	24	123	73	174	NAC domain-containing protein 19
3swp_A	4e-30	24	123	73	174	NAC domain-containing protein 19
3swp_B	4e-30	24	123	73	174	NAC domain-containing protein 19
3swp_C	4e-30	24	123	73	174	NAC domain-containing protein 19
3swp_D	4e-30	24	123	73	174	NAC domain-containing protein 19
4dul_A	4e-30	24	123	70	171	NAC domain-containing protein 19
4dul_B	4e-30	24	123	70	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g52187.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ693425	0.0	JQ693425.1 Brachypodium distachyon SWN4 (SWN4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304791.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_014754958.1	0.0	NAC domain-containing protein 7-like isoform X1
Swissprot	Q9FWX2	2e-75	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	I1H217	0.0	I1H217_BRADI; Uncharacterized protein
STRING	BRADI1G52187.2	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	7e-67	Arabidopsis NAC domain containing protein 26

Link Out ? help Back to Top
Phytozome	Bradi1g52187.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]