PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g52360.1.p
Common NameBRADI_1g52360, LOC100825439
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 394aa    MW: 40849.3 Da    PI: 6.8027
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g52360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.6e-061455540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+++  +++  fC  +   lC +C  + H        H++ 
  Bradi1g52360.1.p 14 ACNNCAAEQAVVFCAADAARLCLECDGAVHAAsalaanHSRA 55
                      6******99*****************9999656777777765 PP
2CCT57.16.6e-20337380144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R++a+lRY+eK+k+RkF K+i Y+sRKa+A++R+RvKGrF+k++
  Bradi1g52360.1.p 337 RDRAKLRYNEKKKNRKFCKQIMYASRKARADTRKRVKGRFAKAT 380
                       8999*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-71057IPR000315B-box-type zinc finger
CDDcd000210.009521539No hitNo description
PROSITE profilePS5011910.581557IPR000315B-box-type zinc finger
PROSITE profilePS5101713.791337379IPR010402CCT domain
PfamPF062032.1E-14337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDDPRRHHHL AYGACNNCAA EQAVVFCAAD AARLCLECDG AVHAASALAA NHSRAPLCDS  60
CFAAPAAVRC AHDTEDGGGQ FTFCFGCAGH RAPPEGWAAS CPVAHYTGCP TPADVLRLLS  120
VDAPPAQEDF DAWLADKLPQ ILQDVVQDGS QICEGGSTAP STTATITGAE RSSGGGAGVN  180
GSSFVGPNSD HDWNITTNTA TTGTVGHHAA AAGGGANHNN SLAFEPTPSS SVCHIFSSSS  240
SYCSSSLSCL QQQSAMASAT SLLHSLDPQL QLLDGGAAAA AGCSFVLPPA VAGANFLTIS  300
PPQAPPPDQI NGGEGSSTMS GAQQQDPTTM TKKREERDRA KLRYNEKKKN RKFCKQIMYA  360
SRKARADTRK RVKGRFAKAT NENQHILHSA DSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g52360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228152.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
TrEMBLI1H2410.0I1H241_BRADI; Uncharacterized protein
STRINGBRADI1G52360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1410966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.12e-14B-box type zinc finger protein with CCT domain